Severe acute respiratory syndrome diagnostics using a coronavirus protein microarray
Identifieur interne : 003D06 ( Main/Exploration ); précédent : 003D05; suivant : 003D07Severe acute respiratory syndrome diagnostics using a coronavirus protein microarray
Auteurs : Heng Zhu [République populaire de Chine] ; Shaohui Hu [République populaire de Chine] ; Ghil Jona ; Xiaowei Zhu [États-Unis] ; Nate Kreiswirth [Canada] ; Barbara M. Willey [Canada] ; Tony Mazzulli [Canada] ; Guozhen Liu [République populaire de Chine] ; Qifeng Song [République populaire de Chine] ; Peng Chen [République populaire de Chine] ; Mark Cameron [Canada] ; Andrea Tyler [Canada] ; Jian Wang [République populaire de Chine] ; Jie Wen [République populaire de Chine] ; Weijun Chen [République populaire de Chine] ; Susan Compton ; Michael Snyder [États-Unis]Source :
- Proceedings of the National Academy of Sciences of the United States of America [ 0027-8424 ] ; 2006.
Descripteurs français
- KwdFr :
- Algorithmes, Analyse par réseau de protéines (), Anticorps antiviraux (sang), Canada (épidémiologie), Chine (épidémiologie), Données de séquences moléculaires, Flambées de maladies, Humains, Méthode en double aveugle, Protéines virales (génétique), Protéines virales (immunologie), Protéines virales (isolement et purification), Protéome, Sensibilité et spécificité, Syndrome respiratoire aigu sévère (diagnostic), Syndrome respiratoire aigu sévère (immunologie), Syndrome respiratoire aigu sévère (virologie), Syndrome respiratoire aigu sévère (épidémiologie), Séquence d'acides aminés, Technique d'immunofluorescence indirecte, Test ELISA, Virus du SRAS (génétique), Virus du SRAS (immunologie), Virus du SRAS (isolement et purification).
- MESH :
- diagnostic : Syndrome respiratoire aigu sévère.
- génétique : Protéines virales, Virus du SRAS.
- immunologie : Protéines virales, Syndrome respiratoire aigu sévère, Virus du SRAS.
- isolement et purification : Protéines virales, Virus du SRAS.
- sang : Anticorps antiviraux.
- virologie : Syndrome respiratoire aigu sévère.
- épidémiologie : Canada, Chine, Syndrome respiratoire aigu sévère.
- Algorithmes, Analyse par réseau de protéines, Données de séquences moléculaires, Flambées de maladies, Humains, Méthode en double aveugle, Protéome, Sensibilité et spécificité, Séquence d'acides aminés, Technique d'immunofluorescence indirecte, Test ELISA.
- Wicri :
- geographic : Canada, République populaire de Chine.
English descriptors
- KwdEn :
- Algorithms, Amino Acid Sequence, Antibodies, Viral (blood), Canada (epidemiology), China (epidemiology), Disease Outbreaks, Double-Blind Method, Enzyme-Linked Immunosorbent Assay, Fluorescent Antibody Technique, Indirect, Humans, Molecular Sequence Data, Protein Array Analysis (methods), Protein Array Analysis (statistics & numerical data), Proteome, SARS Virus (genetics), SARS Virus (immunology), SARS Virus (isolation & purification), Sensitivity and Specificity, Severe Acute Respiratory Syndrome (diagnosis), Severe Acute Respiratory Syndrome (epidemiology), Severe Acute Respiratory Syndrome (immunology), Severe Acute Respiratory Syndrome (virology), Viral Proteins (genetics), Viral Proteins (immunology), Viral Proteins (isolation & purification).
- MESH :
- chemical , blood : Antibodies, Viral.
- geographic , epidemiology : Canada, China.
- diagnosis : Severe Acute Respiratory Syndrome.
- epidemiology : Severe Acute Respiratory Syndrome.
- genetics : SARS Virus, Viral Proteins.
- immunology : SARS Virus, Severe Acute Respiratory Syndrome, Viral Proteins.
- isolation & purification : SARS Virus, Viral Proteins.
- methods : Protein Array Analysis.
- statistics & numerical data : Protein Array Analysis.
- virology : Severe Acute Respiratory Syndrome.
- Algorithms, Amino Acid Sequence, Disease Outbreaks, Double-Blind Method, Enzyme-Linked Immunosorbent Assay, Fluorescent Antibody Technique, Indirect, Humans, Molecular Sequence Data, Proteome, Sensitivity and Specificity.
Abstract
To monitor severe acute respiratory syndrome (SARS) infection, a coronavirus protein microarray that harbors proteins from SARS coronavirus (SARS-CoV) and five additional coronaviruses was constructed. These microarrays were used to screen ≈400 Canadian sera from the SARS outbreak, including samples from confirmed SARS-CoV cases, respiratory illness patients, and healthcare professionals. A computer algorithm that uses multiple classifiers to predict samples from SARS patients was developed and used to predict 206 sera from Chinese fever patients. The test assigned patients into two distinct groups: those with antibodies to SARS-CoV and those without. The microarray also identified patients with sera reactive against other coronavirus proteins. Our results correlated well with an indirect immunofluorescence test and demonstrated that viral infection can be monitored for many months after infection. We show that protein microarrays can serve as a rapid, sensitive, and simple tool for large-scale identification of viral-specific antibodies in sera.
Url:
DOI: 10.1073/pnas.0510921103
PubMed: 16537477
PubMed Central: 1449637
Affiliations:
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Le document en format XML
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and</wicri:noCountry></affiliation></author><author><name sortKey="Zhu, Xiaowei" sort="Zhu, Xiaowei" uniqKey="Zhu X" first="Xiaowei" last="Zhu">Xiaowei Zhu</name><affiliation wicri:level="2"><nlm:aff id="aff3">Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520;</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Connecticut</region></placeName><wicri:cityArea>Program in Computational Biology and Bioinformatics, Yale University, New Haven</wicri:cityArea></affiliation></author><author><name sortKey="Kreiswirth, Nate" sort="Kreiswirth, Nate" uniqKey="Kreiswirth N" first="Nate" last="Kreiswirth">Nate Kreiswirth</name><affiliation wicri:level="1"><nlm:aff wicri:cut="; and" id="aff5">Department of Microbiology, Mount Sinai Hospital, Toronto, ON, Canada M5G 1X5</nlm:aff><country>Canada</country><wicri:regionArea>Department of Microbiology, Mount Sinai Hospital, Toronto, ON</wicri:regionArea><wicri:noRegion>ON</wicri:noRegion></affiliation></author><author><name sortKey="Willey, Barbara M" sort="Willey, Barbara M" uniqKey="Willey B" first="Barbara M." last="Willey">Barbara M. Willey</name><affiliation wicri:level="1"><nlm:aff wicri:cut="; and" id="aff5">Department of Microbiology, Mount Sinai Hospital, Toronto, ON, Canada M5G 1X5</nlm:aff><country>Canada</country><wicri:regionArea>Department of Microbiology, Mount Sinai Hospital, Toronto, ON</wicri:regionArea><wicri:noRegion>ON</wicri:noRegion></affiliation></author><author><name sortKey="Mazzulli, Tony" sort="Mazzulli, Tony" uniqKey="Mazzulli T" first="Tony" last="Mazzulli">Tony Mazzulli</name><affiliation wicri:level="1"><nlm:aff wicri:cut="; and" id="aff5">Department of Microbiology, Mount Sinai Hospital, Toronto, ON, Canada M5G 1X5</nlm:aff><country>Canada</country><wicri:regionArea>Department of Microbiology, Mount Sinai Hospital, Toronto, ON</wicri:regionArea><wicri:noRegion>ON</wicri:noRegion></affiliation></author><author><name sortKey="Liu, Guozhen" sort="Liu, Guozhen" uniqKey="Liu G" first="Guozhen" last="Liu">Guozhen Liu</name><affiliation wicri:level="1"><nlm:aff id="aff4">Biochip Platform Division, Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Biochip Platform Division, Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="aff6">**College of Life Sciences, Agricultural University of Hebei, Hebei, Baoding 071001, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>**College of Life Sciences, Agricultural University of Hebei, Hebei, Baoding 071001</wicri:regionArea><wicri:noRegion>Baoding 071001</wicri:noRegion></affiliation></author><author><name sortKey="Song, Qifeng" sort="Song, Qifeng" uniqKey="Song Q" first="Qifeng" last="Song">Qifeng Song</name><affiliation wicri:level="1"><nlm:aff id="aff4">Biochip Platform Division, Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Biochip Platform Division, Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Chen, Peng" sort="Chen, Peng" uniqKey="Chen P" first="Peng" last="Chen">Peng Chen</name><affiliation wicri:level="1"><nlm:aff id="aff4">Biochip Platform Division, Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Biochip Platform Division, Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Cameron, Mark" sort="Cameron, Mark" uniqKey="Cameron M" first="Mark" last="Cameron">Mark Cameron</name><affiliation wicri:level="1"><nlm:aff wicri:cut="; and" id="aff5">Department of Microbiology, Mount Sinai Hospital, Toronto, ON, Canada M5G 1X5</nlm:aff><country>Canada</country><wicri:regionArea>Department of Microbiology, Mount Sinai Hospital, Toronto, ON</wicri:regionArea><wicri:noRegion>ON</wicri:noRegion></affiliation></author><author><name sortKey="Tyler, Andrea" sort="Tyler, Andrea" uniqKey="Tyler A" first="Andrea" last="Tyler">Andrea Tyler</name><affiliation wicri:level="1"><nlm:aff wicri:cut="; and" id="aff5">Department of Microbiology, Mount Sinai Hospital, Toronto, ON, Canada M5G 1X5</nlm:aff><country>Canada</country><wicri:regionArea>Department of Microbiology, Mount Sinai Hospital, Toronto, ON</wicri:regionArea><wicri:noRegion>ON</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Jian" sort="Wang, Jian" uniqKey="Wang J" first="Jian" last="Wang">Jian Wang</name><affiliation wicri:level="1"><nlm:aff id="aff4">Biochip Platform Division, Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Biochip Platform Division, Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Wen, Jie" sort="Wen, Jie" uniqKey="Wen J" first="Jie" last="Wen">Jie Wen</name><affiliation wicri:level="1"><nlm:aff id="aff4">Biochip Platform Division, Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Biochip Platform Division, Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Chen, Weijun" sort="Chen, Weijun" uniqKey="Chen W" first="Weijun" last="Chen">Weijun Chen</name><affiliation wicri:level="1"><nlm:aff id="aff4">Biochip Platform Division, Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China;</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Biochip Platform Division, Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Compton, Susan" sort="Compton, Susan" uniqKey="Compton S" first="Susan" last="Compton">Susan Compton</name><affiliation><nlm:aff wicri:cut=", and" id="aff2">Comparative Medicine</nlm:aff></affiliation></author><author><name sortKey="Snyder, Michael" sort="Snyder, Michael" uniqKey="Snyder M" first="Michael" last="Snyder">Michael Snyder</name><affiliation><nlm:aff id="aff1">Departments of *Molecular, Cellular, and Developmental Biology and</nlm:aff><wicri:noCountry code="subfield">and Developmental Biology and</wicri:noCountry></affiliation><affiliation wicri:level="2"><nlm:aff id="aff3">Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520;</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Connecticut</region></placeName><wicri:cityArea>Program in Computational Biology and Bioinformatics, Yale University, New Haven</wicri:cityArea></affiliation></author></analytic><series><title level="j">Proceedings of the National Academy of Sciences of the United States of America</title><idno type="ISSN">0027-8424</idno><idno type="eISSN">1091-6490</idno><imprint><date when="2006">2006</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Algorithms</term><term>Amino Acid Sequence</term><term>Antibodies, Viral (blood)</term><term>Canada (epidemiology)</term><term>China (epidemiology)</term><term>Disease Outbreaks</term><term>Double-Blind Method</term><term>Enzyme-Linked Immunosorbent Assay</term><term>Fluorescent Antibody Technique, Indirect</term><term>Humans</term><term>Molecular Sequence Data</term><term>Protein Array Analysis (methods)</term><term>Protein Array Analysis (statistics & numerical data)</term><term>Proteome</term><term>SARS Virus (genetics)</term><term>SARS Virus (immunology)</term><term>SARS Virus (isolation & purification)</term><term>Sensitivity and Specificity</term><term>Severe Acute Respiratory Syndrome (diagnosis)</term><term>Severe Acute Respiratory Syndrome (epidemiology)</term><term>Severe Acute Respiratory Syndrome (immunology)</term><term>Severe Acute Respiratory Syndrome (virology)</term><term>Viral Proteins (genetics)</term><term>Viral Proteins (immunology)</term><term>Viral Proteins (isolation & purification)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Algorithmes</term><term>Analyse par réseau de protéines ()</term><term>Anticorps antiviraux (sang)</term><term>Canada (épidémiologie)</term><term>Chine (épidémiologie)</term><term>Données de séquences moléculaires</term><term>Flambées de maladies</term><term>Humains</term><term>Méthode en double aveugle</term><term>Protéines virales (génétique)</term><term>Protéines virales (immunologie)</term><term>Protéines virales (isolement et purification)</term><term>Protéome</term><term>Sensibilité et spécificité</term><term>Syndrome respiratoire aigu sévère (diagnostic)</term><term>Syndrome respiratoire aigu sévère (immunologie)</term><term>Syndrome respiratoire aigu sévère (virologie)</term><term>Syndrome respiratoire aigu sévère (épidémiologie)</term><term>Séquence d'acides aminés</term><term>Technique d'immunofluorescence indirecte</term><term>Test ELISA</term><term>Virus du SRAS (génétique)</term><term>Virus du SRAS (immunologie)</term><term>Virus du SRAS (isolement et purification)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="blood" xml:lang="en"><term>Antibodies, Viral</term></keywords><keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>Canada</term><term>China</term></keywords><keywords scheme="MESH" qualifier="diagnosis" xml:lang="en"><term>Severe Acute Respiratory Syndrome</term></keywords><keywords scheme="MESH" qualifier="diagnostic" xml:lang="fr"><term>Syndrome respiratoire aigu sévère</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Severe Acute Respiratory Syndrome</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>SARS Virus</term><term>Viral Proteins</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Protéines virales</term><term>Virus du SRAS</term></keywords><keywords scheme="MESH" qualifier="immunologie" xml:lang="fr"><term>Protéines virales</term><term>Syndrome respiratoire aigu sévère</term><term>Virus du SRAS</term></keywords><keywords scheme="MESH" qualifier="immunology" xml:lang="en"><term>SARS Virus</term><term>Severe Acute Respiratory Syndrome</term><term>Viral Proteins</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>SARS Virus</term><term>Viral Proteins</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Protéines virales</term><term>Virus du SRAS</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Protein Array Analysis</term></keywords><keywords scheme="MESH" qualifier="sang" xml:lang="fr"><term>Anticorps antiviraux</term></keywords><keywords scheme="MESH" qualifier="statistics & numerical data" xml:lang="en"><term>Protein Array Analysis</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Syndrome respiratoire aigu sévère</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Severe Acute Respiratory Syndrome</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Canada</term><term>Chine</term><term>Syndrome respiratoire aigu sévère</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Algorithms</term><term>Amino Acid Sequence</term><term>Disease Outbreaks</term><term>Double-Blind Method</term><term>Enzyme-Linked Immunosorbent Assay</term><term>Fluorescent Antibody Technique, Indirect</term><term>Humans</term><term>Molecular Sequence Data</term><term>Proteome</term><term>Sensitivity and Specificity</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Algorithmes</term><term>Analyse par réseau de protéines</term><term>Données de séquences moléculaires</term><term>Flambées de maladies</term><term>Humains</term><term>Méthode en double aveugle</term><term>Protéome</term><term>Sensibilité et spécificité</term><term>Séquence d'acides aminés</term><term>Technique d'immunofluorescence indirecte</term><term>Test ELISA</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Canada</term><term>République populaire de Chine</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>To monitor severe acute respiratory syndrome (SARS) infection, a coronavirus protein microarray that harbors proteins from SARS coronavirus (SARS-CoV) and five additional coronaviruses was constructed. These microarrays were used to screen ≈400 Canadian sera from the SARS outbreak, including samples from confirmed SARS-CoV cases, respiratory illness patients, and healthcare professionals. A computer algorithm that uses multiple classifiers to predict samples from SARS patients was developed and used to predict 206 sera from Chinese fever patients. The test assigned patients into two distinct groups: those with antibodies to SARS-CoV and those without. The microarray also identified patients with sera reactive against other coronavirus proteins. Our results correlated well with an indirect immunofluorescence test and demonstrated that viral infection can be monitored for many months after infection. We show that protein microarrays can serve as a rapid, sensitive, and simple tool for large-scale identification of viral-specific antibodies in sera.</p></div></front></TEI><affiliations><list><country><li>Canada</li><li>République populaire de Chine</li><li>États-Unis</li></country><region><li>Connecticut</li></region><settlement><li>Pékin</li></settlement></list><tree><noCountry><name sortKey="Compton, Susan" sort="Compton, Susan" uniqKey="Compton S" first="Susan" last="Compton">Susan Compton</name><name sortKey="Jona, Ghil" sort="Jona, Ghil" uniqKey="Jona G" first="Ghil" last="Jona">Ghil Jona</name></noCountry><country name="République populaire de Chine"><noRegion><name sortKey="Zhu, Heng" sort="Zhu, Heng" uniqKey="Zhu H" first="Heng" last="Zhu">Heng Zhu</name></noRegion><name sortKey="Chen, Peng" sort="Chen, Peng" uniqKey="Chen P" first="Peng" last="Chen">Peng Chen</name><name sortKey="Chen, Weijun" sort="Chen, Weijun" uniqKey="Chen W" first="Weijun" last="Chen">Weijun Chen</name><name sortKey="Hu, Shaohui" sort="Hu, Shaohui" uniqKey="Hu S" first="Shaohui" last="Hu">Shaohui Hu</name><name sortKey="Liu, Guozhen" sort="Liu, Guozhen" uniqKey="Liu G" first="Guozhen" last="Liu">Guozhen Liu</name><name sortKey="Liu, Guozhen" sort="Liu, Guozhen" uniqKey="Liu G" first="Guozhen" last="Liu">Guozhen Liu</name><name sortKey="Song, Qifeng" sort="Song, Qifeng" uniqKey="Song Q" first="Qifeng" last="Song">Qifeng Song</name><name sortKey="Wang, Jian" sort="Wang, Jian" uniqKey="Wang J" first="Jian" last="Wang">Jian Wang</name><name sortKey="Wen, Jie" sort="Wen, Jie" uniqKey="Wen J" first="Jie" last="Wen">Jie Wen</name></country><country name="États-Unis"><region name="Connecticut"><name sortKey="Zhu, Xiaowei" sort="Zhu, Xiaowei" uniqKey="Zhu X" first="Xiaowei" last="Zhu">Xiaowei Zhu</name></region><name sortKey="Snyder, Michael" sort="Snyder, Michael" uniqKey="Snyder M" first="Michael" last="Snyder">Michael Snyder</name></country><country name="Canada"><noRegion><name sortKey="Kreiswirth, Nate" sort="Kreiswirth, Nate" uniqKey="Kreiswirth N" first="Nate" last="Kreiswirth">Nate Kreiswirth</name></noRegion><name sortKey="Cameron, Mark" sort="Cameron, Mark" uniqKey="Cameron M" first="Mark" last="Cameron">Mark Cameron</name><name sortKey="Mazzulli, Tony" sort="Mazzulli, Tony" uniqKey="Mazzulli T" first="Tony" last="Mazzulli">Tony Mazzulli</name><name sortKey="Tyler, Andrea" sort="Tyler, Andrea" uniqKey="Tyler A" first="Andrea" last="Tyler">Andrea Tyler</name><name sortKey="Willey, Barbara M" sort="Willey, Barbara M" uniqKey="Willey B" first="Barbara M." last="Willey">Barbara M. 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